Task 11480242

Name	famous_ua27_1599_200_006645882_4
Workunit	6849254
Created	10 Jun 2010, 12:54:28 UTC
Sent	9 Aug 2010, 0:58:16 UTC
Report deadline	8 Nov 2010, 8:25:27 UTC
Received	13 Aug 2010, 0:08:43 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	193 (0x000000C1) EXIT_SIGNAL
Computer ID	844607
Run time	1 days 11 hours 45 min 36 sec
CPU time	1 days 10 hours 42 min 38 sec
Validate state	Invalid
Credit	2,594.14
Device peak FLOPS	3.11 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> orker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Starting work on structure: _00002 Starting work on structure: _00003 ====================================================== DONE :: 1 starting structures 10131.1 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 3:19:35:] :: BOINC:: Initializing ... ok. [2010- 8- 6 3:19:35:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 ====================================================== DONE :: 1 starting structures 8713.2 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 5:45:40:] :: BOINC:: Initializing ... ok. [2010- 8- 6 5:45:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1o5u.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 60 starting structures 10810.2 cpu seconds This process generated 60 decoys from 60 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 8:46:33:] :: BOINC:: Initializing ... ok. [2010- 8- 6 8:46:33:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1enh.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 100 starting structures 8152.88 cpu seconds This process generated 100 decoys from 100 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 11:22:29:] :: BOINC:: Initializing ... ok. [2010- 8- 6 11:22:29:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 ====================================================== DONE :: 1 starting structures 9403.11 cpu seconds This process generated 4 decoys from 4 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 14: 0:36:] :: BOINC:: Initializing ... ok. [2010- 8- 6 14: 0:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 6 15:43:20:] :: BOINC:: Initializing ... ok. [2010- 8- 6 15:43:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 6 16:43:48:] :: BOINC:: Initializing ... ok. [2010- 8- 6 16:43:48:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 0:44:24:] :: BOINC:: Initializing ... ok. [2010- 8- 7 0:44:24:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 1:48:57:] :: BOINC:: Initializing ... ok. [2010- 8- 7 1:48:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 18 starting structures 5905.02 cpu seconds This process generated 18 decoys from 18 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sat Aug 7 13:03:53 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=15904, iMonCtr=1 Model crash detected, will try to restart... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sat Aug 7 13:03:55 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=15904, iMonCtr=1 Model crash detected, will try to restart... Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Sorry, too many model crashes! :-( (15904): called boinc_finish [2010- 8- 7 14:30:59:] :: BOINC:: Initializing ... ok. [2010- 8- 7 14:30:59:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 17:29:36:] :: BOINC:: Initializing ... ok. [2010- 8- 7 17:29:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 617 starting structures 10515.8 cpu seconds This process generated 617 decoys from 617 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 7 17:31:21:] :: BOINC:: Initializing ... ok. [2010- 8- 7 17:31:21:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 18:43:35:] :: BOINC:: Initializing ... ok. [2010- 8- 7 18:43:35:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00002 Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_1 ... success! Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 20:28:40:] :: BOINC:: Initializing ... ok. [2010- 8- 7 20:28:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00006 ====================================================== DONE :: 1 starting structures 10046.5 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 7 20:58:54:] :: BOINC:: Initializing ... ok. [2010- 8- 7 20:58:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr8_1tit.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 64 starting structures 10711 cpu seconds This process generated 64 decoys from 64 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 7 23:58:15:] :: BOINC:: Initializing ... ok. [2010- 8- 7 23:58:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 1:42:22:] :: BOINC:: Initializing ... ok. [2010- 8- 8 1:42:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 1:43:41:] :: BOINC:: Initializing ... ok. [2010- 8- 8 1:43:41:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 2:53:46:] :: BOINC:: Initializing ... ok. [2010- 8- 8 2:53:46:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip [2010- 8- 8 3: 9: 3:] :: BOINC:: Initializing ... ok. [2010- 8- 8 3: 9: 3:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 4:10:24:] :: BOINC:: Initializing ... ok. [2010- 8- 8 4:10:24:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 5:12: 1:] :: BOINC:: Initializing ... ok. [2010- 8- 8 5:12: 1:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 8 5:45:13:] :: BOINC:: Initializing ... ok. [2010- 8- 8 5:45:13:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00005 Starting work on structure: _00006 ====================================================== DONE :: 1 starting structures 10329.1 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... (4922): No heartbeat from core client for 30 sec - exiting CPDN Monitor - No 'heartbeat' from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Wed Aug 11 15:45:07 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=25515, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Wed Aug 11 19:26:58 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=34882, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Aug 12 02:06:26 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=46889, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Aug 12 02:08:49 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=46964, iMonCtr=1 Model crash detected, will try to restart... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Aug 12 02:08:51 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=46964, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Aug 12 08:31:50 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1090, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Fri Aug 13 00:49:01 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ua27_1599_200_006645882/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1072, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1071): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
12 Aug 2010 16:27:11	844607	11480242	famous_ua27_1599_200_006645882_4	786,266	123,715	0.1573
12 Aug 2010 15:55:31	844607	11480242	famous_ua27_1599_200_006645882_4	776,906	122,272	0.1574
12 Aug 2010 15:50:16	844607	11480242	famous_ua27_1599_200_006645882_4	767,546	120,814	0.1574
12 Aug 2010 15:50:16	844607	11480242	famous_ua27_1599_200_006645882_4	758,186	119,358	0.1574
11 Aug 2010 22:26:24	844607	11480242	famous_ua27_1599_200_006645882_4	748,826	117,888	0.1574
11 Aug 2010 21:54:54	844607	11480242	famous_ua27_1599_200_006645882_4	739,466	116,364	0.1574
11 Aug 2010 21:43:48	844607	11480242	famous_ua27_1599_200_006645882_4	730,106	114,845	0.1573
11 Aug 2010 21:43:48	844607	11480242	famous_ua27_1599_200_006645882_4	720,746	113,374	0.1573
11 Aug 2010 20:37:44	844607	11480242	famous_ua27_1599_200_006645882_4	711,386	111,856	0.1572
11 Aug 2010 20:06:37	844607	11480242	famous_ua27_1599_200_006645882_4	702,026	110,335	0.1572
11 Aug 2010 19:40:14	844607	11480242	famous_ua27_1599_200_006645882_4	692,666	108,857	0.1572
11 Aug 2010 19:15:39	844607	11480242	famous_ua27_1599_200_006645882_4	683,306	107,336	0.1571
11 Aug 2010 18:47:50	844607	11480242	famous_ua27_1599_200_006645882_4	673,946	105,826	0.1570
11 Aug 2010 18:21:22	844607	11480242	famous_ua27_1599_200_006645882_4	664,586	104,301	0.1569
11 Aug 2010 17:54:38	844607	11480242	famous_ua27_1599_200_006645882_4	655,226	102,774	0.1569
11 Aug 2010 17:28:16	844607	11480242	famous_ua27_1599_200_006645882_4	645,866	101,249	0.1568
11 Aug 2010 15:57:25	844607	11480242	famous_ua27_1599_200_006645882_4	636,506	99,742	0.1567
11 Aug 2010 15:36:12	844607	11480242	famous_ua27_1599_200_006645882_4	627,146	98,254	0.1567
11 Aug 2010 15:08:55	844607	11480242	famous_ua27_1599_200_006645882_4	617,786	96,755	0.1566
11 Aug 2010 14:42:29	844607	11480242	famous_ua27_1599_200_006645882_4	608,426	95,285	0.1566