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Task 22316579

Task 22316579

Name oifs_43r3_01cc_2019110100_123_993_12215178_0
Workunit 12215178
Created 24 Feb 2023, 17:39:42 UTC
Sent 24 Feb 2023, 20:22:20 UTC
Report deadline 25 Apr 2023, 20:22:20 UTC
Received 24 Feb 2023, 21:23:03 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 5 (0x00000005) Unknown error code
Computer ID 1526772
Run time 17 min 16 sec
CPU time 17 min 12 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 5.74 GFLOPS
Application version OpenIFS 43r3 v1.21
x86_64-pc-linux-gnu
Peak working set size 4,405.53 MB
Peak swap size 4,983.13 MB
Peak disk usage 1,246.68 MB
Stderr
<core_client_version>7.18.1</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)</message>
<stderr_txt>
(argv0) ../../projects/climateprediction.net/oifs_43r3_1.21_x86_64-pc-linux-gnu
(argv1) start_date: 2019110100
(argv2) exptid: hnw4
(argv3) unique_member_id: 01cc
(argv4) batchid: 993
(argv5) wuid: 12215178
(argv6) fclen: 123
(argv7) app_name: oifs_43r3
(argv8) nthreads: 1
Working directory is: /var/lib/boinc-client/slots/0
Project directory is: /var/lib/boinc-client/projects/climateprediction.net/
app name: oifs_43r3
version: 1.21
Location of temp folder: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178
Copying: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_app_1.21_x86_64-pc-linux-gnu.zip to: /var/lib/boinc-client/slots/0/oifs_43r3_app_1.21_x86_64-pc-linux-gnu.zip
Unzipping the app zip file: /var/lib/boinc-client/slots/0/oifs_43r3_app_1.21_x86_64-pc-linux-gnu.zip
Copying the namelist files from: ../../projects/climateprediction.net/jf_81767f70bbe1636cd2ddd801677d0dff to: /var/lib/boinc-client/slots/0/oifs_43r3_01cc_2019110100_123_993_12215178.zip
Unzipping the namelist zip file: /var/lib/boinc-client/slots/0/oifs_43r3_01cc_2019110100_123_993_12215178.zip
ic_ancil_file: ic_ancil_12215178
ifsdata_file: ifsdata_12215178
climate_data_file: clim_data_12215178
horiz_resolution: 159
vert_resolution: 60
grid_type: l_2
upload_interval: 24
utstep: 3600
nfrres: restart dump frequency (steps) 24
Copying IC ancils from: ../../projects/climateprediction.net/jf_05646b784f3149872b74865b1e4be8fd to: /var/lib/boinc-client/slots/0/ic_ancil_12215178.zip
Unzipping the IC ancils zip file: /var/lib/boinc-client/slots/0/ic_ancil_12215178.zip
Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_53d5f211ca8686ab9fb0da12a1a74ba4 to: /var/lib/boinc-client/slots/0/ifsdata/ifsdata_12215178.zip
Unzipping the ifsdata_zip file: /var/lib/boinc-client/slots/0/ifsdata/ifsdata_12215178.zip
Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /var/lib/boinc-client/slots/0/159l_2/clim_data_12215178.zip
Unzipping the climate data zip file: /var/lib/boinc-client/slots/0/159l_2/clim_data_12215178.zip
Checking for progress XML file: /var/lib/boinc-client/slots/0/progress_file_12215178.xml
Creating progress file: /var/lib/boinc-client/slots/0/progress_file_12215178.xml
last_cpu_time: 0
upload_file_number: 0
last_iter: 0
last_upload: 0
model_completed: 0
total_length_of_simulation: 10627200
result_base_name: oifs_43r3_01cc_2019110100_123_993_12215178_0_r855546731
The child process has been launched with process id: 206450
Executing the command: /var/lib/boinc-client/slots/0/oifs_43r3_model.exe
[EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2091] fp = 0x3124020
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0  (RAND_MAX=2147483647)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [process_options@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [ignore_signals@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef>
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [restore_default_signals@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef>
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.000] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [trapfpe_treatment@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x810730 (old at 0x1ce8440)
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [signal_drhook_init@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x810730 (old at (nil))
[EC_DRHOOK:OptiPlex-7010-Linux:1:1:206450:206450] [20230224:152245:1677270165:0.001] [catch_signals@/home/glenn/github/gc_oifs43r3/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef>
  15:23:15 STEP    0 H=   0:00 +CPU= 27.897
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMGGhnw4+000000
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMSHhnw4+000000
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMUAhnw4+000000
  15:23:34 STEP    1 H=   1:00 +CPU= 19.001
  15:23:51 STEP    2 H=   2:00 +CPU= 16.890
  15:24:17 STEP    3 H=   3:00 +CPU= 26.226
  15:24:34 STEP    4 H=   4:00 +CPU= 16.749
  15:24:50 STEP    5 H=   5:00 +CPU= 16.265
  15:25:17 STEP    6 H=   6:00 +CPU= 26.554
  15:25:33 STEP    7 H=   7:00 +CPU= 16.255
  15:25:50 STEP    8 H=   8:00 +CPU= 16.750
  15:26:16 STEP    9 H=   9:00 +CPU= 25.893
  15:26:32 STEP   10 H=  10:00 +CPU= 16.719
  15:26:49 STEP   11 H=  11:00 +CPU= 16.233
  15:27:17 STEP   12 H=  12:00 +CPU= 28.126
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMGGhnw4+000012
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMSHhnw4+000012
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMUAhnw4+000012
  15:27:33 STEP   13 H=  13:00 +CPU= 16.196
  15:27:50 STEP   14 H=  14:00 +CPU= 16.687
  15:28:15 STEP   15 H=  15:00 +CPU= 25.775
  15:28:32 STEP   16 H=  16:00 +CPU= 16.665
  15:28:48 STEP   17 H=  17:00 +CPU= 16.189
  15:29:15 STEP   18 H=  18:00 +CPU= 26.281
  15:29:31 STEP   19 H=  19:00 +CPU= 16.172
  15:29:47 STEP   20 H=  20:00 +CPU= 16.631
  15:30:13 STEP   21 H=  21:00 +CPU= 25.688
  15:30:30 STEP   22 H=  22:00 +CPU= 16.610
  15:30:46 STEP   23 H=  23:00 +CPU= 16.669
  15:31:16 STEP   24 H=  24:00 +CPU= 29.591
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMGGhnw4+000024
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMSHhnw4+000024
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMUAhnw4+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMGGhnw4+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMSHhnw4+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMUAhnw4+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMGGhnw4+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMSHhnw4+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMUAhnw4+000012
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_01cc_2019110100_123_993_12215178_0_r855546731_0.zip
Uploading the intermediate file: upload_file_0.zip
  15:31:32 STEP   25 H=  25:00 +CPU= 16.154
  15:31:49 STEP   26 H=  26:00 +CPU= 16.695
  15:32:15 STEP   27 H=  27:00 +CPU= 25.744
  15:32:31 STEP   28 H=  28:00 +CPU= 16.662
  15:32:48 STEP   29 H=  29:00 +CPU= 16.444
  15:33:14 STEP   30 H=  30:00 +CPU= 26.281
  15:33:30 STEP   31 H=  31:00 +CPU= 16.195
  15:33:47 STEP   32 H=  32:00 +CPU= 16.680
  15:34:13 STEP   33 H=  33:00 +CPU= 25.721
  15:34:29 STEP   34 H=  34:00 +CPU= 16.675
  15:34:46 STEP   35 H=  35:00 +CPU= 16.199
  15:35:14 STEP   36 H=  36:00 +CPU= 27.979
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMGGhnw4+000036
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMSHhnw4+000036
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMUAhnw4+000036
  15:35:30 STEP   37 H=  37:00 +CPU= 16.172
  15:35:46 STEP   38 H=  38:00 +CPU= 16.657
  15:36:12 STEP   39 H=  39:00 +CPU= 25.699
  15:36:29 STEP   40 H=  40:00 +CPU= 16.637
  15:36:45 STEP   41 H=  41:00 +CPU= 16.169
  15:37:11 STEP   42 H=  42:00 +CPU= 26.260
  15:37:27 STEP   43 H=  43:00 +CPU= 16.154
  15:37:44 STEP   44 H=  44:00 +CPU= 16.630
  15:38:10 STEP   45 H=  45:00 +CPU= 25.669
  15:38:26 STEP   46 H=  46:00 +CPU= 16.615
  15:38:43 STEP   47 H=  47:00 +CPU= 16.667
  15:39:13 STEP   48 H=  48:00 +CPU= 29.684
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMGGhnw4+000048
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMSHhnw4+000048
Moving to projects directory: /var/lib/boinc-client/slots/0/ICMUAhnw4+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMGGhnw4+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMSHhnw4+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMUAhnw4+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMGGhnw4+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMSHhnw4+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_12215178/ICMUAhnw4+000036
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_01cc_2019110100_123_993_12215178_0_r855546731_1.zip
Uploading the intermediate file: upload_file_1.zip
  15:39:29 STEP   49 H=  49:00 +CPU= 16.168
  15:39:46 STEP   50 H=  50:00 +CPU= 16.669
free(): invalid pointer
double free or corruption (out)

</stderr_txt>
]]>
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